rs231131124 SNP Detail

Summary

• ID
  rs231131124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76235121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTGAATG TTCAATCATA CTTCTGATAA
  AAGATTTCTC TTTCAAACCC TGTCTGGCAT ACATATATGG ACAGCAAGCA GTCTCAGGCC
  TAAAAAAGGC AAGGCTTCAC TCATAGATCT GGGCCCTACA GAGTGCAGAG GTTTCAACAA
  R
  GACTCACAAT GGTAAAGCTG CATTCAATTT GATAGTTTTT GTTGTTCTTT TTGTTATTGT
  ATGCTTGCTA TTCTCTTAAG TGTTGTCTAG ATCTTAAAAA CTATCTCAAT AGGTAGGAAT
  AGAAGAATGA TAATGTCTGC ATATACCAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170470	CHEV_4_75962788	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231131124					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76235121 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			1047 bp proximal
Rr594083	regulatory region 594083			1141 bp proximal