rs231122961 SNP Detail

Summary

• ID
  rs231122961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:42949480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGTCA AGACAAGGGA
  AAGCTAAACC AGGCCAGGTC AAGTTGGATC ACAATCTGAT AGAAGACGAG TAAGAAGGGA
  TGAGCTTTGG ATACTGATCC AGAGCCTTTG CCTCTCCTTC GACTCGAAAG AATGCCTGGT
  GTCACCAACA ACTGATGAGT GCAGCTTTCC TAATAGGTTG TCTTTGAGGT TGCACTCGTT
  Y
  CAGAAGGTTC TCCCTGGACT CAGGCGGTGG CTAGAATGTC TCACCTTCTC ATACTGGAGA
  CTGGACTAAT ATAGTTGCCC ACACTGGCTT GGGTCGAAAT CACAGGGACC AGCCAATAAA
  ATCAAAGGGC GCCTGGAGTT GCCTCCCTAT GTTCTTTTCA CCAATAACAC GACGAGATGG
  AGAAGAGGTG TGGTTGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361308108	MGP_WTSI_4_42962352	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231122961					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361308108	MGP_WTSI_4_42962352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:42949480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14174	CpG island 14174	113 bp proximal
Dnajb5	DnaJ heat shock protein family (Hsp40) member B5	386 bp upstream
Gm69502	predicted gene, 69502	within coordinates
Rr398224	regulatory region 398224	139 bp upstream
Rr590880	regulatory region 590880	1239 bp distal
Rr590883	regulatory region 590883	701 bp distal
Rr590884	regulatory region 590884	within coordinates
Rr590885	regulatory region 590885	426 bp proximal
Rr590886	regulatory region 590886	927 bp proximal
Tssr36908	transcription start site region 36908	381 bp upstream
Tssr36909	transcription start site region 36909	889 bp upstream
Tssr36910	transcription start site region 36910	971 bp upstream
Tssr36911	transcription start site region 36911	1001 bp upstream
Tssr41383	transcription start site region 41383	36 bp downstream