rs231112388 SNP Detail

Summary

• ID
  rs231112388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115676513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCGAGCC ATCATGTGGT
  TGCTGGGATT TGAACTCACA ACCTTCAGAC TCACAACCTT CAGAAGAGCA GTCGGTGCTC
  TTAACCGCTG AGCCATCTCT CCAGCCCCCC TACAGTGTTT TTTTTAGCCC CAAATCCATA
  AACATCTGTG TCAAGATACT TCACCCAGTC AGGATTTAAG GATAGGGGAT TTCCTTAGGG
  Y
  CATGTCTTTG TTGTGCATCT ATCCTGTTCC CATTGGTAGG GTATTCAACT GTGCCAGAGG
  ATGTGCCTTG TCTACCATTC ATGTCTTAAC TTGTCAGTCA GAATGGTACT TGTCTAACAT
  TCATGTCTTA ATTTGCCAAC CAGGATGTCA GTTACCCACG TACATATCTC TTTCTGACAA
  GTAGGATGTC AGTTCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916402	CHEV_6_115649570	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231112388					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115676513 () rs orientation: forward

Symbol	Name	Function Class
Gm38879	predicted gene, 38879	1978 bp upstream
Rr379973	regulatory region 379973	383 bp downstream
Rr637027	regulatory region 637027	1159 bp distal
Rr637028	regulatory region 637028	559 bp distal
Rr637029	regulatory region 637029	648 bp distal
Rr637030	regulatory region 637030	414 bp distal
Rr637031	regulatory region 637031	1284 bp proximal
Rr637032	regulatory region 637032	1936 bp proximal