rs231017266 SNP Detail

Summary

• ID
  rs231017266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90944413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGATCT CTGCCATCCC
  TCACTGACCT TCACTGCCCA TTCATTGGCT CATCACCCCC TCATTAAGGC TCACTCACTT
  CCGTATTAAG CCCCAGCTCA TTGCTCCCCA GAACCTTCCC ACTATTCCTA GTGCACTGCC
  AGGGCACATG GCCCCTTTGC ATGCGTAAAG ATATACCTTT ATCTTCCCTA AACCAGAGGC
  Y
  ACAGTTGGAA GGGTGGTAGG CTCGGTAACT AACAACTCAT TGTACCAAGA CCTGCACCCC
  TGAGTCTTGG TCCAGACTGG CCCCTAGTTT TCCCTTCTTA GTCCTCGACC CTGCTGACCC
  CTCCTGCAGC CCTGGGCTAT CCCTTATGGA CTTCACGCCT GTTCTTCCCT TTGCAGGTTT
  CCTACATGCC CCGGATGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354807894	MGP_WTSI_2_90954225	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231017266					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354807894	MGP_WTSI_2_90954225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90944413 () rs orientation: forward

Symbol	Name	Function Class
Rr373534	regulatory region 373534	401 bp downstream
Rr560649	regulatory region 560649	1180 bp distal
Rr560650	regulatory region 560650	within coordinates
Rr560651	regulatory region 560651	1121 bp proximal
Rr560652	regulatory region 560652	1184 bp proximal
Spi1	Spi-1 proto-oncogene	Intron
Tssr18850	transcription start site region 18850	790 bp downstream
Tssr18851	transcription start site region 18851	190 bp upstream
Tssr18852	transcription start site region 18852	247 bp upstream
Tssr18853	transcription start site region 18853	1092 bp upstream
Tssr18854	transcription start site region 18854	1127 bp upstream
Tssr18855	transcription start site region 18855	1292 bp upstream
Tssr18856	transcription start site region 18856	1339 bp upstream
Tssr18857	transcription start site region 18857	1454 bp upstream
Tssr18858	transcription start site region 18858	1518 bp upstream
Tssr18859	transcription start site region 18859	1625 bp upstream
Tssr25158	transcription start site region 25158	1677 bp downstream