rs231007579 SNP Detail

Summary

• ID
  rs231007579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9096491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATTGTGA TGAttttttt tttttttttt
  tttttttttt tttttttttt ACTGCTGGGA AGCCAGTAGT GTTCAAAGGC TGGAAAATAG
  GTCTATATAA TATAATATTT TCACATAGCT TTTGTCGGGA CTGGTCTTTT TTTTTTTTTC
  W
  AACATCATTT TGTTTTATCA GTGTCTTTTA AAATCGTTCA TCTGAACTGC TTATATATTT
  CTATGCCCCT TTCTTTTGTG GTTTAAAAAT ATAACCAGAT GAATTTCCTG TTTATGCTTT
  TGGGTACCAA TATATAAATA ATTTAATCTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321738850	CHEV_6_9046491	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231007579					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9096491 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	872 bp proximal
Tssr54933	transcription start site region 54933	96 bp downstream