rs230975307 SNP Detail

Summary

• ID
  rs230975307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGCCTCA AGCCCTATGA
  CCCGAGTTTG GTCTTTCCAG CTCTGGTGGA AGAACTGATT GCAAGTAAGT GTCCTCCGAC
  CTCCACATGC GCACGACAAC CTTTGAGTCA AATTACTGCT CATCTCTGCA CGGAGCTGTG
  CCAGTCATCT AAGGAATGTT CTACAGAACT GGGAGTCTTC CCCATTCAAG ACCAAAGTCA
  R
  CAAGGTGAGA GTGGCTGAGG TATATTCAAG ATTTGAAGAG ACGACATAAC ATTGTCAGAG
  AAGGCAAGGA CTTAGGAAAT TGGGAGGGGG GGGGCACATA CTCCAAGAGG AAGCCATCAA
  ATGAGAAAAT CCCAGCCAGC CATCTTCTGC CTTGGAACTT TAAATTGACC ACAATGCTAA
  AAGGTGAATG GACAACAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317076	CHEV_4_129780514	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230975307					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997063 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1562 bp distal
Rr600439	regulatory region 600439	702 bp distal
Rr600440	regulatory region 600440	203 bp distal
Rr600441	regulatory region 600441	550 bp proximal
Rr600442	regulatory region 600442	1232 bp proximal
Tssr39229	transcription start site region 39229	1616 bp upstream