rs230960273 SNP Detail

Summary

• ID
  rs230960273
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107543273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAAGCCAG AAAGAAGTCT TACCCCACTG
  CATTAACTGT AGGATCTGTC CCAGCTGAGT CCCCGCGGTG GCCATCCTGA CTCGGGCTGC
  TGTAGTTTTG AACCTCAGCA GAAATCGCTG TGGGACTCGG ACACCATCTG CCCACTTCCC
  K
  CTGGAGAATG CACTGCAGTG ACTCTATGGG GGGGGGGGGG GGGTAAAGCC CGGGTTTCCA
  GCAGACCGCC TTCGGCCCTG GGGTCAGACA ACTTGGCTGG CGCTGGCTGG CAACTTCGAC
  TGCCGGTCTG TACACTTCCA GTTCCCGCCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250029	CHEV_4_107358681	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230960273					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107543273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14543	CpG island 14543	1819 bp distal
Dmrtb1	DMRT-like family B with proline-rich C-terminal, 1	Intron
Rr376978	regulatory region 376978	1357 bp upstream
Rr597042	regulatory region 597042	1925 bp proximal
Tssr42693	transcription start site region 42693	1845 bp upstream