rs230932003 SNP Detail

Summary

• ID
  rs230932003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76353443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAACAGA GACACCATTT
  TCTCGAATTA AACGTCTGGC GGGACAAAGT TAACTGTTGT GAGGCAATAC AAGATTATTA
  TAACACACAC TCACACACAC GCACACGCAC ACACACACAC ACACACACAC ACACACACAC
  ACACACAGTG AAAATAGCAG GCTTTGTTCT TGGGCTCAGT AGGTAATACC AAGGCCCTTG
  Y
  CACCCAAGCC TGGGGACATG AGTCCAATCC CTGTGGAAGC AGAAGACCAG TTCCACAACC
  CTGACCTCCC AATACATTAC ACATAGACAG ACCATAATAA ATGAATAACT GTCACGAGCT
  TTTTTTTTTT TTTAAAGAAA GAAAGACTAT CTCAACAAAA GCCTTTGTGC ATTGCTTAAG
  GTAAAATCAC CGCTAAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170925	CHEV_4_76081110	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230932003					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76353443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			561 bp proximal
Tssr42160	transcription start site region 42160			586 bp downstream
Tssr42161	transcription start site region 42161			657 bp downstream