rs230927826 SNP Detail

Summary

• ID
  rs230927826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8947859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAATTTG GTGCTATGAA
  CTCAGGCTCC TGAGGTATAG ACTAACATCA AAACATGGTC CGCAGTGTGT ATCTATCACT
  CAAGATCAGG CTCTGACTAA TGGAGAGCGA AATAGCCAGC ATTCGAGAAA GGCCTTTATT
  GATGCCCACC CCTGCGGCCT GAAAGTGGGC ATGTTAGAAG AAAGACCTGG TCTCAGTCTT
  Y
  ATGGAGCTGA TCCCATGCTT GAGTGTGGGA GAGGGTGAAG GCCACAGGGA AAGAACCAGA
  GCTGCGGTTT GAGGGGGAAT GGTGGGCGCT TGGGGAAGCA TGGACATATG GAGAGAATGG
  GTTTGGGAAA AAAATTTAAA CATAAGTAAA AAGATGCAAG GGCACAGAAA AGACTTAGGG
  GAGAGAAGGA GAGAGGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367333481	MGP_WTSI_6_8897859	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230927826					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367333481	MGP_WTSI_6_8897859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8947859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	289 bp proximal
Cpgi17156	CpG island 17156	1801 bp proximal
Nxph1	neurexophilin 1	572 bp upstream
Rr626455	regulatory region 626455	265 bp proximal
Rr626456	regulatory region 626456	770 bp proximal
Rr626457	regulatory region 626457	1327 bp proximal
Tssr54925	transcription start site region 54925	568 bp upstream
Tssr54926	transcription start site region 54926	711 bp upstream
Tssr54927	transcription start site region 54927	749 bp upstream
Tssr54928	transcription start site region 54928	1056 bp upstream
Tssr54929	transcription start site region 54929	1092 bp upstream
Tssr54930	transcription start site region 54930	1193 bp upstream
Tssr54931	transcription start site region 54931	1811 bp upstream
Tssr54932	transcription start site region 54932	1953 bp upstream