rs230927541 SNP Detail

Summary

• ID
  rs230927541
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151857665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGGCGGG GCGTGGCGGG
  GCGTGGCGGG GCGGGGCGGG GCGGGGGGGG GGAGCATGCA ATTCAGTCCC AAGGTAGAGG
  AAAGGCTATG GGATCCTCTG TGTCCTCCAG CGAAGAGCGG GTCCATAGGA AACACAGACA
  AAGAAGAGGA TGCACGGAGG CCCTGGGGAA CAGCAGCGTC ACATTTCTGG TGCGTGGTGA
  S
  GTAACGGCAT AGCTAATCTT TCCCTAATTC AAGCTGTCTC AGAATGCTGA GCCTAGCCAG
  CTCCCCTTCT GCAGGACTCC TCAGTCTTCA CCGGCCTACC CCATCACACT GCAGGCAGCG
  CGGAGCTGAA TCCCGGAGCC ACGGGCATGA GAAGGTCCTG ACCCGCCCAC ACTGGACTCT
  GACACAGAGA AACAGAAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028249	CHEV_3_151814992	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230927541					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151857665 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm16198	predicted gene 16198			1419 bp upstream
Gm64753	predicted gene, 64753			262 bp upstream
Rr587468	regulatory region 587468			1600 bp distal
Rr587469	regulatory region 587469			within coordinates
Rr587470	regulatory region 587470			298 bp proximal