rs230868778 SNP Detail

Summary

• ID
  rs230868778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135662543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCCTTGGG TTTCACCCAT TCCCCGCTTc
  cccccccccc cccccccgcc cATGTTCCTG CTTCCCTGGA GCCCTGTTGG ATATGAGCCC
  CTGACACAGG GCCAGGGAGA ACAAGGAGAA GCCTGTATGG AGCTGTGGGT CTCCCCCAGC
  S
  GGAGAAGGGC TTTGTGTCTA AACAAAACAC TGCTTGGGCC GGCTTCCCAC CACGTGGCTA
  AGGGACTGTT CCTCCCTTAG TAGGTGTCCC TAAGGACATG AGCATGCCCC CTATTGCTTT
  AGGGGGTTGC ACAGGAAGGA GAAAATCTAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319992811	CHEV_1_137631382	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230868778					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135662543 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419257	regulatory region 419257			1659 bp distal
Rr419258	regulatory region 419258			within coordinates