rs230847007 SNP Detail

Summary

• ID
  rs230847007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117738966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT CATTCCCAGC TCCTTATCCA
  Y
  ACTTACCTTT CATACACCTT GACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280668	CHEV_4_117554374	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230847007					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117738966 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Cpgi14670	CpG island 14670			928 bp proximal
Gm12841	predicted gene 12841			1781 bp upstream
Rr598245	regulatory region 598245			441 bp proximal
Rr598246	regulatory region 598246			1234 bp proximal
Rr598247	regulatory region 598247			1333 bp proximal
Rr598248	regulatory region 598248			1449 bp proximal
Rr598249	regulatory region 598249			1816 bp proximal
Tssr38640	transcription start site region 38640			1773 bp upstream
Tssr38641	transcription start site region 38641			1828 bp upstream
Tssr43002	transcription start site region 43002			1659 bp downstream