rs230835678 SNP Detail

Summary

• ID
  rs230835678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119455683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGAAAT CCTATCCTTC
  ATGCAGATAT TTAAGACCCG AGGCTACACT GTATAGAGTT GAGCTCTGCC CTAGATTCAT
  AAAATATACA TAAAGCATAA GGCTGGAGCA TCTTTAACCA GACCAAAGAG TGTATGTGTG
  TCAGCACATA CAGATGTATT AGGTATCCGT ACAGCTGGGC CGTGCAATCT ACAGTCTAAG
  W
  GGCCGAGGAA AAAGACAAAA CCTGGTGTAG GTTAGAGCGC AAGGCAGGGG CAGAAGCAGT
  GGGAAGTTTT GACACAAAGT TGAAAGGGAA AGGAACTCAC ATGGGTGTAT GGAAACAACA
  AGATTGTGGA AGGCAGGCAC ACTGGACAAC TTCCAGAAAT TTCTAGAACG AGAGCTGTCA
  AACTATGCTG ACTAAAAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321928127	CHEV_6_119428740	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230835678					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119455683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	146 bp proximal
Fbxl14	F-box and leucine-rich repeat protein 14	946 bp upstream
Rr637690	regulatory region 637690	484 bp distal
Rr637691	regulatory region 637691	456 bp proximal
Rr637692	regulatory region 637692	1671 bp proximal
Tssr58502	transcription start site region 58502	758 bp upstream
Tssr58503	transcription start site region 58503	782 bp upstream
Tssr58504	transcription start site region 58504	809 bp upstream
Tssr58505	transcription start site region 58505	1023 bp upstream
Tssr62722	transcription start site region 62722	1737 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron