rs230820685 SNP Detail

Summary

• ID
  rs230820685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAATTCT GTCTTCCTTA
  TTTGTAGGTA ACCCTCCACA CAGCTAACTC TAGTATAAAC ATTTGTGTTA TTTATAAATT
  TGAATGTTTA TATTTTCCTC CTACAAGTTG ATTTCTGACA TTCATAAATC CTCTCACGTC
  TCTTTTATTC TTTTTATGTT TTATTTATTG AACATTTTTT CCTTAAAAAT TCTATTTTTT
  Y
  ACATACCATA AAAATGATGT TATTTAACAT GTAGCATTTG GGATTATTGT TTCATTTCAT
  TACATTATGG TACTTTAATT TTTAAAAATG ATTTGAAATG TAAATCAAGT GCATAACCAT
  AAAATGTAAA AAATTCTAAG TTTCCTTAGA AGAGCAGCTT GCATTTAAAA AACTTAATAG
  AGTAAAAAAG AAAACGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137003	MGP_WTSI_3_60277537	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230820685					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137003	MGP_WTSI_3_60277537	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381036 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	1166 bp downstream
Rr577397	regulatory region 577397	526 bp distal
Rr577398	regulatory region 577398	135 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29248	transcription start site region 29248	1409 bp downstream
Tssr29249	transcription start site region 29249	1382 bp downstream
Tssr29250	transcription start site region 29250	1007 bp downstream
Tssr29251	transcription start site region 29251	949 bp downstream
Tssr29252	transcription start site region 29252	928 bp downstream
Tssr29253	transcription start site region 29253	874 bp downstream
Tssr29254	transcription start site region 29254	829 bp downstream
Tssr29255	transcription start site region 29255	809 bp downstream
Tssr29256	transcription start site region 29256	799 bp downstream
Tssr29257	transcription start site region 29257	778 bp downstream
Tssr29258	transcription start site region 29258	532 bp downstream
Tssr29259	transcription start site region 29259	487 bp downstream
Tssr29260	transcription start site region 29260	1794 bp upstream