rs230757135 SNP Detail

Summary

• ID
  rs230757135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153363442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTTCT GAGGTCTGGT
  CTCACTGGCC TCACGGATCA CCTGTCTAGG GCCCTCATAG CTCATGGCCT CAGGAATGTG
  GCAGAGGGCT GAGTGTTCCA CTCTAATGTC CTCAGTTTCT GTTATGTGGG TGCCTCTGCC
  CATCTCAGAG GCTCTAGGCT GGTGAAGCCT GCACCCACAA GGCAGGATAA CCCAGAGGCT
  Y
  CCACCTGCCT GGACAGAGTG GAGTTCCAAT CCTCAGCAGG GTCTGCTGCT GCAAGGATTG
  CTGGTCCGGA ACACACCCTC TCTGGTCTTC TGTCCCACTC CTCTCTATAC AGTTTTCTGG
  TACTATCGCC CACAGCAGGC TCTTGAACTA GAATCCTTTG GAAGAAATCC AGATTGAAAT
  AGAGACAGCA TGGCTTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321030948	CHEV_3_153320769	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230757135					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153363442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			367 bp proximal
Rr587720	regulatory region 587720			767 bp proximal
Rr587721	regulatory region 587721			1866 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant