rs230750624 SNP Detail

Summary

• ID
  rs230750624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36916929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTTCAT ACATCAAATG
  CATCTTCTGT GAGATGCATG CCATAGCTAG CAGACTCTCC TTTTTCTGGC TTCCTTTTCC
  TACGTTGATT ATACTGTCTA CATTATCAGG ACGATGTTTA CAACCCCCAC GCCACAATTG
  GAATCTGGAA CAAGGTAGTT TTCAAATCAG TAGTGACCTG TGTCTCTCAG ACTAGGCTAC
  R
  CCCTGTGGAC ATGGCCCCGC CCCTCTGCTC AGGCCTGTTC TCTTGTAAAA ACAGGATTCG
  CCTCTAGGCA CAGGTTCCAA CTTTAGTCTT TAGTTTGGTC CTGAAGCTCA GGCTTTGCCC
  CATTGACCTA GATCTCATCC CTAGGGCCTA AGCCCTGTCC TCTGCCCCGG CCTTCCAAGG
  CCCCGCCTCC GCCCCGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320705825	CHEV_3_36761702	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230750624					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36916929 () rs orientation: forward

Symbol	Name	Function Class
Bltp1	bridge-like lipid transfer protein family member 1	324 bp upstream
Cpgi13092	CpG island 13092	3 bp proximal
Rr575409	regulatory region 575409	1165 bp distal
Rr575410	regulatory region 575410	within coordinates
Rr575411	regulatory region 575411	337 bp proximal
Tssr28876	transcription start site region 28876	769 bp downstream
Tssr28877	transcription start site region 28877	740 bp downstream
Tssr28878	transcription start site region 28878	322 bp upstream
Tssr28879	transcription start site region 28879	368 bp upstream
Tssr28880	transcription start site region 28880	386 bp upstream
Tssr28881	transcription start site region 28881	399 bp upstream