rs230655462 SNP Detail

Summary

• ID
  rs230655462
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148020813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT GATCATGGAC TCCTCTGAGC
  T
  CCAAATGAGG GTAGGGGGCG CGCAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321415845	CHEV_4_147310465	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230655462					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148020813 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15284	CpG island 15284			within coordinates
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1			Intron
				Noncoding-Transcript-Variant
Rr377387	regulatory region 377387			921 bp upstream
Rr604526	regulatory region 604526			359 bp proximal
Rr604527	regulatory region 604527			1046 bp proximal
Rr604528	regulatory region 604528			1701 bp proximal
Tssr40234	transcription start site region 40234			457 bp upstream
Tssr44566	transcription start site region 44566			357 bp downstream
Tssr44567	transcription start site region 44567			405 bp downstream