rs230630963 SNP Detail

Summary

• ID
  rs230630963
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62420673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTGCCA TTGATTCTCG
  CCCCGCCCCA CTCTAGGCGT CACCAAGCTC CTCCCTCGCG CCCGTCACTC GCCACGCTGA
  GTCTTGGGCC TCTTGTCCCT TAGGTTACCC CGTAGCTTCC CTGCTCCCTG TCTCACGCCC
  TCTCACCGTC CCCTGGCTTC TTAAGGTCAC TGTCTCACCC CTCATCACGT TCCTCCCCAC
  W
  GCCCTTATAC TCATTATCAC AACCCAGGTG TTCTCTTTGC TTCTCATCTC TATCCCCCGG
  CCCCCGCCTC CGTGGGATGG AGACACTTAG GGGACCTAGA CTAACTTGGG AATGGCAATG
  GCGGGGAGTG GGGTTAGGGC TCAGGCCGGC TCCCCAAACG CAGTGAGGAC TCCAGCAAGG
  CTCTGTCCCT TTCTGTTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss361714287	MGP_WTSI_4_62163470	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs230630963					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714287	MGP_WTSI_4_62163470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62420673 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			within coordinates
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			1214 bp distal
Rr593325	regulatory region 593325			171 bp distal
Rr593326	regulatory region 593326			within coordinates
Tssr42008	transcription start site region 42008			254 bp upstream
Tssr42009	transcription start site region 42009			210 bp upstream
Tssr42010	transcription start site region 42010			176 bp upstream