rs230626387 SNP Detail

Summary

• ID
  rs230626387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152020373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAACTC TACAGTCAAG
  CGGCCCACAG CTGCCTAAAC TTCAGCTCTA GACCTGATGC CGCTCCTGCC CTACAAACAC
  ACGCACCCAC ATACACACGC ACCCACATAC ACACGCACCT ACATACACAC ACCTACATAC
  ACACACCGAC ATACACATGC ACCCACATAC ACACGCACCC ACATACACAC GCACCCACAT
  R
  CACACACCCA CATACACACG CACCCACATA CACAAGCACC CACATACACA CGCACCCACA
  TACACACACA CACACATACA CACGCACCCA CATACACATG CACCCACATA CACACACACC
  CACATACACA TGCACCCACA TACACACGCA CCCACATACA CACACCCACA TACACAAGCA
  CACACATACA CACGCACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	DBA/1J	I/LnJ	LP/J	MOLF/EiJ	NON/ShiLtJ	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
ss360264008	MGP_WTSI_3_151977700	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	DBA/1J	I/LnJ	LP/J	MOLF/EiJ	NON/ShiLtJ	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ
rs230626387					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264008	MGP_WTSI_3_151977700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152020373 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			within coordinates
Rr587524	regulatory region 587524			857 bp proximal
Rr587525	regulatory region 587525			1075 bp proximal
Rr587526	regulatory region 587526			1119 bp proximal
Rr587527	regulatory region 587527			1538 bp proximal
Rr587528	regulatory region 587528			1830 bp proximal