rs230608653 SNP Detail

Summary

• ID
  rs230608653
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15187244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAG CAGCCGTCTC
  CATAATGATG TGTGTTTAGA GCTGGGGTTG AATCGCTTTC ACTGTCACCA GGCTGTGTAA
  TAGAAAACTT TCGTTCTTGC TTCTCAGTCA TCGTTTACCT TTGAACTGTT CTGACTTTAA
  ATTTTATTAT CTGCAGTTAG TTCACTGTGC CCTCTCCAAG GCCTGCTTAT GTGTCTTTAT
  K
  GTCAGTCCTC CTGTCCGACA AGTTTGAAAA CAAAGTATCT CGGAGAGTGT ATGGAGGGGT
  TTAACGATTA CCCTGTTGGT TTTCATGGGA AGCAAAGATC TGTGGTTCAC GGAGATTACG
  GTATAGGAGG GTTACAGGTA TCTGTTTAGA AATGTGGGCT TAGTTTCAAA ACAAGTTGTT
  TGGGTTTTCT TTTTTTCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367474022	MGP_WTSI_6_15137245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230608653					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367474022	MGP_WTSI_6_15137245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15187244 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr406279	regulatory region 406279			78 bp proximal
Rr626648	regulatory region 626648			1729 bp distal
Rr626649	regulatory region 626649			838 bp distal
Rr626650	regulatory region 626650			within coordinates
Rr626651	regulatory region 626651			695 bp proximal
Tssr54979	transcription start site region 54979			1852 bp downstream
Tssr54980	transcription start site region 54980			1793 bp downstream
Tssr54981	transcription start site region 54981			1725 bp downstream
Tssr54982	transcription start site region 54982			1650 bp downstream
Tssr54983	transcription start site region 54983			1619 bp downstream
Tssr54984	transcription start site region 54984			1590 bp downstream
Tssr54985	transcription start site region 54985			1580 bp downstream
Tssr54986	transcription start site region 54986			1386 bp downstream
Tssr54987	transcription start site region 54987			401 bp downstream
Tssr54988	transcription start site region 54988			349 bp downstream
Tssr54989	transcription start site region 54989			332 bp downstream