rs230593772 SNP Detail

Summary

• ID
  rs230593772
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127646412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACACAC TCTGCATAGC
  TCAAAAACTA TAAGGTTTAT TTTGGGGGGA AAAAAGGAGG ATGAGAAGAA GAAGAAATAA
  ATATACTAAT ATCTATCAAG ATTCAGTGAA CTATAACAGA TTTAAATTTC AGTGTTCAAA
  AGCAGTTTTG CTGGAGTGGA ACAATGGTCA TCTCTTCCCA ATTGGTCTGA CTTCATTCCC
  S
  CCCCCCCCCC CAAGGATTTT AAAAACTGCA TCAGAAGTCG CATGACTTGT GAAGATGTTA
  ACCGTCTGGC CCTTTACGGA TATGGCTCAC TCTCGTGCAT TTATTGCTGA GGCAGCAAAG
  GCTGCTCTGC TTTCTAAGGC GACTTCCCCA GTAAGGAAGA CGGAAAATGG CAGCTGTTAT
  AGAAAACAGT CGCCATCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	SWR/J
ss359648999	MGP_WTSI_3_127555681	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G	G	C	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	SWR/J
rs230593772					SNP	C	G	G	C	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359648999	MGP_WTSI_3_127555681	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127646412 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	753 bp distal
Rr584884	regulatory region 584884	4 bp proximal
Rr584885	regulatory region 584885	641 bp proximal
Rr584886	regulatory region 584886	749 bp proximal