rs230584555 SNP Detail

Summary

• ID
  rs230584555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58433843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGTAAT AGCATCCCAA
  TGGGAAGTGA AGTCTCCGTC CCCAGTAGTC CCTCCTCCCA GTTATCCATC CATCGTTCTT
  CATCTTCCAT AGGAATAGAC AGGTAACAGA AAGTATTAGT TTGATGTGTG ACCTGTGGTC
  TGCAATGCCG GGTGTTGCTT GGACCCTTCT TAATAGAAGA AACAAGACTC TTCACACCGA
  R
  TTCATCTGAA CTTAAGTATT ATTAAAAATT ATATGCTCCC TTATTGTTAT GAGGTTTGTG
  GGAGTTGATA GGGAGCAAGA CATTGCTAGT GTAGGTTAGG TTTCATGCTG AAGATGTGGC
  TTAAGGTGGC GACAGTGAGC AGGATAATGA TAGTCTAATG TTTTCGATTG AAACAGCTGT
  GAGACAGTAT TTAAGAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358099863	MGP_WTSI_3_58330344	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230584555					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358099863	MGP_WTSI_3_58330344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58433843 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6720482G16Rik	RIKEN cDNA 6720482G16 gene			508 bp upstream
Eif2a	eukaryotic translation initiation factor 2A			Intron
				mRNA-UTR
Rr397681	regulatory region 397681			368 bp downstream
Rr577247	regulatory region 577247			591 bp distal
Rr577248	regulatory region 577248			815 bp distal
Rr577249	regulatory region 577249			40 bp distal
Serp1	stress-associated endoplasmic reticulum protein 1			538 bp upstream
Tssr886	transcription start site region 886			685 bp upstream
Tssr29207	transcription start site region 29207			1294 bp downstream
Tssr29208	transcription start site region 29208			578 bp downstream
Tssr29209	transcription start site region 29209			412 bp downstream
Tssr29210	transcription start site region 29210			361 bp downstream
Tssr33349	transcription start site region 33349			1262 bp upstream
Tssr33350	transcription start site region 33350			694 bp upstream
Tssr33351	transcription start site region 33351			661 bp upstream
Tssr33352	transcription start site region 33352			634 bp upstream
Tssr33353	transcription start site region 33353			550 bp upstream
Tssr33354	transcription start site region 33354			525 bp upstream