rs230579348 SNP Detail

Summary

• ID
  rs230579348
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141164654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATTGGT GGACACCAGT
  TGTCTGCTAA ATCTATAAAC TCTAAAAGGT TTTTGTCTGT TGTCATAATC TGTTCGTTCT
  GACACAGGTT GAAGGCTGCT CCAGAGGGCT GGAATTTGGC CCAACGATAG GGGAATTAAC
  CTCTGGATGG GCAACACTCC AGCCTTTCCA CTGTGTTGAT ATTCTTCTTT TTTTTTTTTT
  G
  TTTTTTGTTT TTCAAGACAG GGCTTCTCTG TGTATCCCTG GCTGTCCCAG AACTCACTCT
  GTAGACCAGG CTGGCCTCAA ACTCAGAAAT CCGCCTGCCT CTGCCTCCCC AGTGCTGGGA
  TTAAAGCCCA GCTCTCTCTC TCTCTCTCTC TCTCTCTATA TATATATATA TATATATATA
  TATATGATGA GTACACTGTA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss363520838	MGP_WTSI_4_140993258	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs230579348					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520838	MGP_WTSI_4_140993258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141164654 () rs orientation: forward

Symbol	Name	Function Class
Rr603766	regulatory region 603766	1844 bp proximal
Srarp	steroid receptor associated and regulated protein	1238 bp upstream