rs230562139 SNP Detail

Summary

• ID
  rs230562139
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74031771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACACTG TGCGTGCATA
  GGCACCCGGT CACCACTCTA TTCCCAAGAC TTACGTAAGC TCCTGTCTGA AATACGTGAA
  GAAATGGGCA GGAAATAAAG ACATATTTAA AAACAGGCTG AACCTAAATG GCGGTGTATA
  ATGACACCAA GAGACACTTT CTTTTAATCA AACGGGACTG TGGTAATTGT CCTTTTCTTA
  W
  TGGAGAGGAA GACACAAGAA GACACCTTGG AAAGGCAATT TTGCTCTTGT TAGGGAAAAA
  AATCTTACAA AATAAGTCTG GGTGTTGTTG GGAGCCGTGC GGTCAGGATT GGGGTGATGA
  CAGCAGCGGC CATAGACGCA GTCACTCACT TAGCTTGGAA ATTCTTTATT TCCCTGTGGA
  CCAATATTTG CAGTGCCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320346977	CHEV_2_74039484	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230562139					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74031771 () rs orientation: forward

Symbol	Name	Function Class
Gm31534	predicted gene, 31534	1644 bp upstream
Gm75409	predicted gene, 75409	within coordinates
Rr559290	regulatory region 559290	286 bp proximal