rs230561727 SNP Detail

Summary

• ID
  rs230561727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121661540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTAATTAG TAAGGGAAGA AAATATAATG
  CTGCGGAAAG GGTAGAATTC AGTTATAACT ATTTCAACAT ACATAAAGat tataatatat
  atttaagatt tattttattt gtgtgtgtgt gtgtgtgagt gtgtgtgtgt gcagtgtgtg
  Y
  gcaggtgcct gtggaagcca gatgagagct caggagggaa agcatcagaa accctggagc
  tggagtcacg ggtgcttgtg agccacctaa tgagggtttg gggaagagca ttccagccct
  ctgtgagagc agcaggcact tttaactcca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320906526	CHEV_3_121570809	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230561727					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121661540 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	within coordinates
Gm65480	predicted gene, 65480	592 bp upstream
Rr584187	regulatory region 584187	102 bp distal
Rr584188	regulatory region 584188	1837 bp proximal