rs230539203 SNP Detail

Summary

• ID
  rs230539203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114815596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCtgcctt ccttcctttt ttcttgctgt
  aaaaagacat cataaccaag gcagcttaca gtaaaaagag tttattgggg cttatagttt
  cagacattag agtccatgtc catcgtggca gggaacatgg tagcaggcag gcagacatgg
  Y
  gctggaataa tagctgagag ctcacttctt gatctacaaa cacaaggcag agggagagct
  aactgggagt gtctgggcgt ttgagacctc cacacccatc ccccatgaca tacctcctcc
  aacaaagcca agcctcctga tccttctcaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914848	CHEV_6_114788653	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230539203					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114815596 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			within coordinates
Rr636840	regulatory region 636840			293 bp proximal
Rr636841	regulatory region 636841			1644 bp proximal