rs230490357 SNP Detail

Summary

• ID
  rs230490357
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15184993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAATTG ACAAAGGATT
  GACAAACACC ATTAGCTGAA AATTTTCCAT TTCATTGCAA CTATGCATTG TTTACTTTAC
  TGTAAATATC TTAATACATC ATCCTCTGAA TATGCTGGCA GAGAGGCTGG AGAACCGTGA
  TTTCAATTAA GGTTAGTAAT TGATGGTATC TAGCGTTCAA AGACTGGGGC TTGATTAACA
  K
  CTGCTTGGAC AAATTGTCAT TGTGAAGTGG TTTTGATGTG CATTGAAGAT TATTTCTTTC
  TGGCTTATCT GATGTTGTGG CTGTGAAATG CTTGTCTTGG ATTTGCTTAT TTTTGTAAAC
  TACTTCCTTT GGCTGTAAAT TGCAGTGCAC TGGAGCTTTA CCAAAAGTAC AGTGTATAAT
  GGTAAGCTTC TCCTAATAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367474005	MGP_WTSI_6_15134994	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230490357					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367474005	MGP_WTSI_6_15134994	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15184993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			1686 bp distal
Rr626647	regulatory region 626647			337 bp distal
Rr626648	regulatory region 626648			22 bp proximal
Rr626649	regulatory region 626649			523 bp proximal
Rr626650	regulatory region 626650			1563 bp proximal
Tssr54974	transcription start site region 54974			413 bp downstream
Tssr54975	transcription start site region 54975			332 bp downstream
Tssr54976	transcription start site region 54976			249 bp downstream
Tssr54977	transcription start site region 54977			227 bp downstream
Tssr54978	transcription start site region 54978			221 bp upstream
Tssr54979	transcription start site region 54979			376 bp upstream
Tssr54980	transcription start site region 54980			445 bp upstream
Tssr54981	transcription start site region 54981			462 bp upstream
Tssr54982	transcription start site region 54982			588 bp upstream
Tssr54983	transcription start site region 54983			613 bp upstream
Tssr54984	transcription start site region 54984			645 bp upstream
Tssr54985	transcription start site region 54985			661 bp upstream
Tssr54986	transcription start site region 54986			864 bp upstream
Tssr54987	transcription start site region 54987			1810 bp upstream
Tssr54988	transcription start site region 54988			1857 bp upstream
Tssr54989	transcription start site region 54989			1908 bp upstream