rs230487866 SNP Detail

Summary

• ID
  rs230487866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62422343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGATATT CTGAATCTAG
  CTTCTTTTTG ATTTGCAGCT TCAAAGCTGG GTACACTTAG CCAGGTGTGG TGGTAAACCT
  GCAAGTCCAG TTAGGAAGCC GAGGCAGAAG TTACAGACCA GCCTTGGCTA TGGAGCATGA
  TCCCATTTCA AACAGAAAAA CATATGTACC CTTTAATGGA TGTTTTCATC CCATAACTCA
  R
  TTATTAAAAT CCCCTGACAG TTTCACCCCT TGGTCCATCG GAGCCCCCTG GCTTCTTACT
  CTGCAGATGC TAGCTTGTGG TGTTTTCTCT CTGGGAAATC AAATCAACCC CTGACCCTTG
  TTTGATTTTT CAAGATAGGG TTTCTCTGTG TAGCCTTGGC TGTCCTAGAA CTTACTCTGT
  TGACCAGGTT GGCCTTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142495	CHEV_4_62165140	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230487866					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62422343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	1596 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	1906 bp upstream
Rr593325	regulatory region 593325	1841 bp distal
Rr593326	regulatory region 593326	1340 bp distal
Rr593327	regulatory region 593327	1354 bp proximal
Tssr42008	transcription start site region 42008	1924 bp upstream
Tssr42009	transcription start site region 42009	1880 bp upstream
Tssr42010	transcription start site region 42010	1846 bp upstream