rs230485689 SNP Detail

Summary

• ID
  rs230485689
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127998155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTAGGT GTCAAGGAGC
  ACTCTCTCCC TCACACCCTG ATCCTGAGCA TTAAGCCCTG GCTTCCTGGC TTTATTCTGC
  TTCAGCTTTC AACTCTCCTG CCACACCACA CTGCTGGCAC CACAGCACAC AGCAGCACCA
  CACACCACAG CACACGGCAG CACCACACCG CTGGCACCAC AGCACATGCA CCACACTGCT
  G
  ACACCACAGC ACACGGCAGC AAACACCAGG CTCAGAATGA GGTGCACCTG CAGCAGCCTC
  ATTGCCGAAT CTGATGTAAG GTAGAACCAC CCCTCCTCCA GCTGTTTTCT GTTGTGTGGG
  CCACATGTGC TGGGCCAGAG GAGCAGCTCC AGCCACCGTG CCAGCTGTCA AGGGATTTCT
  GGACTGGCAC TGTGCTCTGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355609999	MGP_WTSI_2_127981971	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230485689					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355609999	MGP_WTSI_2_127981971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127998155 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367306	regulatory region 367306	21 bp upstream
Rr564662	regulatory region 564662	462 bp distal
Rr564663	regulatory region 564663	within coordinates
Rr564664	regulatory region 564664	855 bp proximal