rs230450146 SNP Detail

Summary

• ID
  rs230450146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118456571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGCCGCC CCACAGGATC
  GCGTGCTCGC TCGCCCGCCC GCCCGCCGCA ATCGGAGAAC CCCTCAAATC GGGGGATGCC
  GCGGGGCTCG GTGTCCCCCG CAAGACGAAG GACAAAAGTT CCTCAGCTGA CAGGCGAGGG
  CTCTGCCCAT GCGCCTAACG GCCCTCCTTT CTGGACTACG CTTTCCAGAA GCCTCCGCGA
  Y
  GACTCCGTGT GTGATCACGT TATGAAGTTT GGCTCTGAGT ACCTCACTGT TGAGCGCTGC
  GCTGCTTCCC TAAGGCCTGA TCTTTAAGGG GATGATTGAA CAAGCAATGG GCACCCTGCG
  GAGTTAGACA GAAGGCCGTC AGAGGGTGCG CAGTGTGTAC GGTGGGGTAG CTTAAATACT
  TGAAGTTTAC ATCCAAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924626	CHEV_6_118429628	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230450146					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118456571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	within coordinates
Rr637483	regulatory region 637483	1289 bp distal
Rr637484	regulatory region 637484	301 bp distal
Rr637485	regulatory region 637485	within coordinates
Rr637486	regulatory region 637486	899 bp proximal
Rr637487	regulatory region 637487	1060 bp proximal
Tssr62662	transcription start site region 62662	292 bp upstream
Zfp9	zinc finger protein 9	mRNA-UTR