rs230438170 SNP Detail

Summary

• ID
  rs230438170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117774148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTTAAAG AAGCCAATTG
  GATCCCTGTG AGTTTGAGGC CAGCCTGGTC TACAGAGTGA AGTCCAGGAC AGCCAGGGCT
  ACACAGAGAA ACCCTGTCTC GGAAAAAAAA AAAAAAAAAA AAAGCACCAG CTGCTCTTCC
  AGAGACCTGG GTTCAATTCC CAGCACTCAC AAGGTGGTTC ACAACCGTTT TAGGGTTTCT
  R
  TTGGTGTAAC AAAACACCAT GACCAAATTT GGCAGGAAAG GGTTTATTCA TCTTACAATC
  CCATATTATA GTCCATCTCT GGAGAAGCCA GGACAGGAAC TCAAGCATGG CCAGCCAGTC
  TGCATACCAG ATGCTATCCT CAGAGATCTT TGGCCAGCCA AGTCGTGCGC AGAGAAGAGC
  AGCAGAGGGC TCAGCTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362979900	MGP_WTSI_4_117589556	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230438170					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362979900	MGP_WTSI_4_117589556	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117774148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14674	CpG island 14674	1438 bp distal
Ipo13	importin 13	1952 bp upstream
Rr398419	regulatory region 398419	1537 bp downstream
Rr598257	regulatory region 598257	1963 bp distal
Rr598258	regulatory region 598258	1984 bp distal
Rr598259	regulatory region 598259	1462 bp distal
Rr598260	regulatory region 598260	1422 bp proximal
Tssr43011	transcription start site region 43011	1994 bp upstream
Tssr43012	transcription start site region 43012	1933 bp upstream
Tssr43013	transcription start site region 43013	1897 bp upstream
Tssr43014	transcription start site region 43014	1776 bp upstream
Tssr43015	transcription start site region 43015	1753 bp upstream