rs230434291 SNP Detail

Summary

• ID
  rs230434291
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14946324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGGATACA ACCCAAGGCT TCTAGTGCCA ACTCAAAATG
  TAAATGGAAA ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACATGCAC
  G
  CACGCACTTA GGAACATTCT TTAATATTCT GCAGCTTTGG CATATGGTCC CAGAGTTATT
  CTGTCCTCCC ATGTTTCATA CCATGGTTAC TACTTTTGT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	SEA/GnJ	WSB/EiJ	ZALENDE/EiJ
ss357060904	MGP_WTSI_3_14881264	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RF/J	SEA/GnJ	WSB/EiJ	ZALENDE/EiJ
rs230434291					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357060904	MGP_WTSI_3_14881264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14946324 () rs orientation: forward

Symbol	Name	Function Class
Rr397609	regulatory region 397609	738 bp downstream
Rr573718	regulatory region 573718	1507 bp distal
Rr573719	regulatory region 573719	1194 bp distal
Rr573720	regulatory region 573720	446 bp distal
Rr573721	regulatory region 573721	1534 bp proximal