rs230391571 SNP Detail

Summary

• ID
  rs230391571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:25645043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAGCCT TGGCCTCACT
  CCTTCCTGGC TGACATTCTC AGCCCACTCC CTTTGATCCC TTACGTGTTC TGGGGACTCT
  TCAAGCCACT CCCATGCTCC TCTGCTGTGT CTTCCCTGCC ATGTTTCAGT CTTTGTCTTC
  TCTTTCTCCA CGCTGCCTCA GGTACCGACC TTAATGACAG TCTCTCTCTC TCTCTCTCCC
  Y
  CCCCCCCTCT CTCTCTCTCT TTCTCTCTGT TTGCAGGTCC TCGGGAACCC TATGGCCAAT
  GCCAACAACC CTATGAATCC AGGTGGCAAC CCCATGGCAT CAGGCATGAG CACCAGCAAC
  CCCGGCATCA ACTCCCCACA GTTCGCAGGG CAACAGCAAC AGTTCTCCAC CAAAGCTGGC
  CCTGCACAGC CCTATATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss390583555	MGP_WTSI_14_26464105	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	C	C	C	C	C	C	C	T	T	C	C	T	C	C	T	T	T	C	T	C	C	C	C	C	T	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs230391571					SNP	T	T	C	T	T	T	T	T	T	C	C	C	C	C	C	C	T	T	C	C	T	C	C	T	T	T	C	T	C	C	C	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390583555	MGP_WTSI_14_26464105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:25645043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr489197	regulatory region 489197			1469 bp proximal
Rr489198	regulatory region 489198			1921 bp proximal
Tssr124634	transcription start site region 124634			96 bp upstream
Zmiz1	zinc finger, MIZ-type containing 1			Intron
				Noncoding-Transcript-Variant