rs230381933 SNP Detail

Summary

• ID
  rs230381933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGTCCGTC TGCTGTTGTG GGATAATGAG
  AAGGATCACT TGTGATACGA AGGCAAAAGA TTAAAGCTGT CTTGTTTATT GAACTTCCTT
  Taaaaaaaaa aaaaaaaaaa aaaaaGagcc gggaggtggt ggcacatgcc tttaatccca
  R
  cactcaggag gccgagttca ggattttctg agttcgaggc ctgcctggtc tacaaagtga
  gtttcaggac agccagggct atacagagaa accctgtctt ggaaaaacaa aaAACAAAAA
  TAACAACAAA GAATCATACA GCcttagact                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337428	CHEV_4_132477121	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230381933					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	776 bp proximal
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1473 bp upstream
Rr601111	regulatory region 601111	419 bp proximal
Rr601112	regulatory region 601112	1277 bp proximal
Rr601113	regulatory region 601113	1296 bp proximal
Rr601114	regulatory region 601114	1522 bp proximal
Tssr43726	transcription start site region 43726	59 bp upstream
Tssr43727	transcription start site region 43727	1281 bp downstream
Tssr43728	transcription start site region 43728	1341 bp downstream
Tssr43729	transcription start site region 43729	1384 bp downstream
Tssr43730	transcription start site region 43730	1399 bp downstream
Tssr43731	transcription start site region 43731	1414 bp downstream
Tssr43732	transcription start site region 43732	1421 bp downstream