rs230378728 SNP Detail

Summary

• ID
  rs230378728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137574733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACTGTT GTTGAAAGAA
  TTTCCAGGTT AAGAGGATTA AGAGGAAACT TGATAAGCAG CCCCCTGTTT TAATTTATTG
  TTTTCTTAAT TCTTTTTACA TCGTTGAAGC CTTTTATCTC TGCTGATTTT CACTTTACCT
  TTTTGTTAGC ATTGGGACAG GGCAGGAAAA GATAGTGAAA GAAAAGTTAA TTGTAAAAAG
  Y
  GTGAAATAAA AATTATCATT TTTAGGTGTA CAGTTTAGTA GTGTTAAGTA TTTTCATGCG
  TACCACAGGA TCGGTATTTT TTTGTTTTTT ATCTTACACC AGTTAAGTAA CCCCCTGTAC
  TCTCCTGTTT CCTGGTAGCT CCCTTGCTAC TGTCCATTCT CATAGACTAG TCTAATTTGG
  TACCTGATCT ATGTGAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894967	MGP_WTSI_3_137531936	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230378728					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894967	MGP_WTSI_3_137531936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137574733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13867	CpG island 13867	588 bp distal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	Intron
Rr586006	regulatory region 586006	1287 bp distal
Rr586007	regulatory region 586007	1196 bp distal
Rr586008	regulatory region 586008	488 bp proximal
Tssr31918	transcription start site region 31918	1175 bp downstream
Tssr31919	transcription start site region 31919	1138 bp downstream
Tssr31920	transcription start site region 31920	1096 bp downstream
Tssr31921	transcription start site region 31921	1059 bp downstream
Tssr31922	transcription start site region 31922	1008 bp downstream
Tssr31923	transcription start site region 31923	903 bp downstream
Tssr31924	transcription start site region 31924	855 bp downstream
Tssr31925	transcription start site region 31925	843 bp downstream