rs230376881 SNP Detail

Summary

• ID
  rs230376881
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACGTCC CTGCCATGTA
  TCCGCTATCC TTCTTTGCAC TAAGATGAGT CGCTCACCAT CATTCTAGGA TTTAGGTGTA
  CATCGTCTCT GAGAGGATTT ATTTATCCAG GCAGAGGAAA GCCCTAGAGC CCGAGAGAGC
  GTTTCCCCAG GGTAGCCTAG CTTGTGTAAA ACGACCTCCT CCACTGAAGT GGCAGGACTT
  M
  CTTGAGATGT TAAGGAGGGA CAGGGTACCT ACTGAAGATC TGCACAGGGG CAACTAGAGA
  CTCAGTCAGG AGGGAGTGTT GGTTTACCGA GCATCAAACC CCAAACCTAT CGCTAATTTC
  CACTATCAGG GAAGGGATGC ATTTGTGTGT GTGTGTGTGT GTGTGCTGTA GGTTTCCTTA
  CAGTTGCATA AAAGGAAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359614804	MGP_WTSI_3_126301155	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230376881					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359614804	MGP_WTSI_3_126301155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			183 bp distal
Gm17225	predicted gene 17225			within coordinates
Gm43011	predicted gene 43011			1792 bp upstream
Rr367547	regulatory region 367547			1773 bp downstream
Rr397994	regulatory region 397994			1049 bp upstream
Rr584646	regulatory region 584646			813 bp distal
Rr584647	regulatory region 584647			1330 bp distal
Rr584648	regulatory region 584648			1218 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1125 bp proximal
Tssr31566	transcription start site region 31566			1894 bp downstream
Tssr31567	transcription start site region 31567			1865 bp downstream
Tssr31568	transcription start site region 31568			1818 bp downstream
Tssr31569	transcription start site region 31569			1383 bp downstream
Tssr31570	transcription start site region 31570			1251 bp downstream
Tssr31571	transcription start site region 31571			1199 bp downstream
Tssr31572	transcription start site region 31572			1124 bp downstream
Tssr31573	transcription start site region 31573			983 bp downstream
Tssr31574	transcription start site region 31574			824 bp downstream
Tssr31575	transcription start site region 31575			802 bp downstream