rs230349019 SNP Detail

Summary

• ID
  rs230349019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59520183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGACTCA GCCAGGAAAA
  AAACGTTTAA AATGATTGCA GAGACAGATT CAACGATTCA ACTTGTCACT TTCCTGCATG
  GGAATTCATA GTATTCATGA TATTTCTTGC TGGCTCCTGT GAGAGGGCAG AGGCCCCTTA
  GTAACTTCTG ACCGGTCGGG GCAATCAGAC AACGCGCACG AGCGCCCAGT GCCTGGAGCG
  R
  GGTTAAGATT TGACCAAGAA CAAAAGAAAG CTTGCCAATC AGAAAATGCT ACCCCACAAG
  GAAAATAACC CCTCTTTGTG TCTCGAAAGC CCTTTAATTA GCAAATGCCC TGCTTTCTAA
  CGCGCGTTAA AACATTTCTA TGTAGATTCC AAATGGAAAG ATCAAATGGT TGCTTCTGCA
  ACGAAGAAGG GGTCCCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349787436	MGP_WTSI_1_59537868	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230349019					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349787436	MGP_WTSI_1_59537868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59520183 () rs orientation: forward

Symbol	Name	Function Class
Fzd7	frizzled class receptor 7	1400 bp upstream
Rr396064	regulatory region 396064	819 bp upstream
Rr411638	regulatory region 411638	91 bp distal
Rr411639	regulatory region 411639	549 bp proximal
Rr411640	regulatory region 411640	740 bp proximal
Rr411641	regulatory region 411641	910 bp proximal
Tssr6869	transcription start site region 6869	1067 bp upstream
Tssr6870	transcription start site region 6870	1096 bp upstream
Tssr6871	transcription start site region 6871	1109 bp upstream
Tssr6872	transcription start site region 6872	1640 bp upstream
Tssr6873	transcription start site region 6873	1847 bp upstream
Tssr6874	transcription start site region 6874	1871 bp upstream
Tssr6875	transcription start site region 6875	1916 bp upstream