rs230346156 SNP Detail

Summary

• ID
  rs230346156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107779586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTGAGAA GGCACGGTGG GCAGATGACA
  CTGGGTTAAA TAACTGCTGG ACACGGAGGA AAACAAACCC CACAGCAGGG AACAATACCA
  TGGTACAATG TGTGTCTTTT CCCGGATGGA GCAGGAAGGA TCACTGGCAG CTGGGCCAGG
  R
  CAGTGAGGGG GATTTGAAAC AGGTTTGGAG CTTGGTTTGG GAAATAAACA ATGAATGCAA
  AGACAATTTA GGTTTGGCTT AGAGTGAAGG TAATTTCTAT TCTGGCAACC TAGAACAAAG
  CTGAGAGATC AACGAGAAAA CTAGACTCCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251798	CHEV_4_107594994	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230346156					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107779586 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14548	CpG island 14548			849 bp proximal
Cpt2	carnitine palmitoyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr597091	regulatory region 597091			within coordinates
Rr597092	regulatory region 597092			1161 bp proximal
Rr597093	regulatory region 597093			1213 bp proximal
Tssr42698	transcription start site region 42698			1090 bp downstream
Tssr42699	transcription start site region 42699			1119 bp downstream
Tssr42700	transcription start site region 42700			1130 bp downstream