rs230292826 SNP Detail

Summary

• ID
  rs230292826
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81844759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGTTTC TGAGGAATGT
  TACAACTCCA GCCTAATTTC CACATGAGAG CAGTCCAGGC CTCTTATCTG CAGAGCTATC
  TTTTATCTCT ACCAGATGCA AACAGCCCTT TCTGCTTCTG ACTTCCAGTA AACATTGTTT
  TTGTTTTTTC TGACAGTGGG GTTGGAAGCA TTTCCAAGCA ATACTAAAAC AACTTTGCTA
  S
  TCCAGTAAAG CAAATTAGAA TAAGAAAGAG ATTACAAGAG TACATAGGAT TATCATACAA
  TTAAAGTTTT GTTTTGTCGT GTGAGCTATA TAAGCATGCA TGCATGCATG TATGTATGTA
  TGTGTGTGTA TATATATATA TGTATACACA CACACATATA TATGCATAAC TGCACACATA
  TACACATGCA TGCTGTCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817206	CHEV_3_81741374	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230292826					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81844759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			1531 bp proximal