rs230276170 SNP Detail

Summary

• ID
  rs230276170
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:114685728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGGAG GGTCTGCTGT
  ATGCAGACAT TGTGATGTTT CTCATAAGGC CCTCAGAGAT CTTGTGAGTA TCTTTTCTGA
  CACTTCTCTT GGAAAGTTCT GCTTGGGAAA CTTCTCCTGG TGACAAAGGA AACCATGCAG
  TGTGATTGTT TTAGGTCCTT GTACCAGGTT TTCCGTTCAC TGAATCCTGG GGGGGGGGGG
  S
  GGGGGGGGGA GAATAATTGT TTCCGAGATG AAGATTGAGA AAATTGTTTA AGTATCATTG
  AAAGTATAAA ACAAAATTGT TTTCTCAATA AATTTAATTA GCTATATACA CTGCAGTTGT
  GAGAGCAAAC GCTGAAGTTG GGACCAGCTC TTTAGATAGA ACAGGACCTT TGTGGTCTCT
  GGAGGTAACA CGCATAAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320463742	CHEV_2_114680983	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230276170					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:114685728 () rs orientation: forward

Symbol	Name	Function Class
Gm13974	predicted gene 13974	within coordinates
Rr1575	regulatory region 1575	745 bp distal
Rr562876	regulatory region 562876	1134 bp distal
Rr562877	regulatory region 562877	1192 bp distal
Rr562878	regulatory region 562878	708 bp distal