rs230265134 SNP Detail

Summary

• ID
  rs230265134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141169035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctggcttta aacttacagt gattctcctg
  cttctgcctc ctgagttctg gggtgacaag catagcccac cacacctaac ACTTCACAAC
  TTTGCAGTCT TGTTTACATA ACACTAACTC TGCACAGAGA TTTCTCTGAC AGACTTCAAG
  Y
  TCTTATTCTT CTTTTGGGAA AATTATAGAG AAAACCACTA GATTTAACCA TAGTCTCTTC
  ATGATATTGA CAGGTTATTA GCACCATCCC CCCATGGTAG CCATTGTCTT CATAAAACCA
  TTTACATTCT GAGGACAAGT AACATAAACG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320992368	CHEV_3_141126238	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230265134					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141169035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1366 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	427 bp distal
Rr586319	regulatory region 586319	1452 bp proximal
Rr586320	regulatory region 586320	1708 bp proximal
Tssr1065	transcription start site region 1065	1421 bp upstream
Tssr1066	transcription start site region 1066	1987 bp upstream
Tssr32031	transcription start site region 32031	1842 bp upstream
Tssr32032	transcription start site region 32032	1905 bp upstream
Tssr35916	transcription start site region 35916	1301 bp downstream