rs230262043 SNP Detail

Summary

• ID
  rs230262043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGATCA GGCTGGGTAG
  GACACTGCAG GCGACTCCTG CCGGGCTTTT CCCTCCAGCT CTTATAAGCT CCTGTACCTG
  TAGGACTGGT TAGCTAGTGA CTCACTCAAT GGAATTTGGG TGGCGCTCCC TATTCCCAGG
  TCCCGCGGAA GAAGCCGGCA GCCCTGAGCT GCCTGAGATA GAATCAGGCA GGGGAGATTG
  Y
  TCCTGCCATC TGCTGACCAA AACCCCATAG AGGAAACCAG TACTTACCTG GCCGCACCCC
  TCCTCATAGC TCAGAACCAG GGCGTCCCAC CTTTCCTAGT GCACCTCAGG AGTTTCTCCA
  GAGGCCCAGC TCCCGACTCT CACGTCCCTA CAATTCCAGA CCCCATAATC CCGTACCTTC
  TTTTTCTCTC AACTCCTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812335	CHEV_6_67485952	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230262043					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	82 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1146 bp distal
Rr631669	regulatory region 631669	703 bp distal
Rr631670	regulatory region 631670	152 bp distal
Rr631671	regulatory region 631671	within coordinates
Rr631672	regulatory region 631672	within coordinates
Tacstd2	tumor-associated calcium signal transducer 2	162 bp upstream
Tssr1872	transcription start site region 1872	1177 bp upstream
Tssr61255	transcription start site region 61255	1213 bp upstream
Tssr61256	transcription start site region 61256	732 bp upstream
Tssr61257	transcription start site region 61257	261 bp upstream
Tssr61258	transcription start site region 61258	156 bp upstream
Tssr61259	transcription start site region 61259	88 bp upstream