rs230213841 SNP Detail

Summary

• ID
  rs230213841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76352333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTTTCT TCTAGTTCTG AATTTTCTAA
  GGAAGGTTCT ACCATGTTTC TGACTTTAAA GTACAAACAA GTTCAGGAAA GGTGACGATG
  GCTCTGGCTT TGTCACTGAT GAGAAGGATT CATCATGAGT GTTTCTTTGG CTCCTTCTTT
  Y
  TCAAACCACT GTACTGCCGT CCCATCTTTT CTTCTATTGC CACTTGAAAA GCATTCCCAA
  ATAGGGTATA GTGTGTTTGT TTCCAGTGAT CACTGAGAAT GCGAATGAAT GCTAAGGCTC
  AGTAATTTAC TCAGTAAATA TCTATAGGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170911	CHEV_4_76080000	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230213841					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76352333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			1671 bp proximal
Tssr42160	transcription start site region 42160			1696 bp downstream
Tssr42161	transcription start site region 42161			1767 bp downstream