rs230211398 SNP Detail

Summary

• ID
  rs230211398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152987435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATGAA ATTCCACATT
  GAATGGCTAA ACAACATGGC TTCCTCCCCT GGGTAAATTA AATAAAGCAA TTATATGATT
  ATTTTAGATA AACATAAACT GTTATTACTG TTATGATAGT TGGTAGTTCT ATTGCTTTGG
  GGACACAAAA GATAAATTGG TTTTTAAGAA TGCCTGGTGT GGGGCTGGAG AGATGGCTCA
  R
  TGGTTACAAG CATGGACAGC TTTGTCCCAG AGGACCGGAA TTCAGTTCCC AGCATCCATA
  TCAGGTGGCT CACAACCACC TGTAACTACA GCTCCATGAA TTGACATTCC CTTCTGGGCT
  TCATGGGAGC CTGCTCATAA ACCCACTACA TACACATGAA TAATGAAAAA AATATGCCGG
  ACATTGCTCC CGGGGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321030490	CHEV_3_152944762	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230211398					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152987435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			330 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant