rs230182861 SNP Detail

Summary

• ID
  rs230182861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40753325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGACGT GGATAACAGG
  AGGCTAGCTG ACAGCATTGA GTACTGATAG GCAAATATGG CTCTCTCCCA CAGCAGCTAG
  GTCTCACTCA CTATGTCGGT ATCTCCTACC CCTGAGATGT GCACAGTGTC TGAAAAGCAT
  GAAACTTGTG AAGTGATGCC TTGCTTGCAG GATAACGTGT TCATTTAAAT ATGTGTGGAG
  R
  TTGGCCTTAA TTGTCTCAAG GATACTGCAG CCAAAGACAA AAAGGTCCTA AATGAGGACC
  TCACTCAGCA TAGAACCTTT TAAAAGTGCC CGCTAGCCTA TTCCTCTTAT TCCTAACTAT
  AAATTGCCCT TGGAGACACA GGCCCCCACT AAGACGACTC ATCTTTGTTG ATAGACCCCC
  TGACCACCCA GGTGCCATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357669161	MGP_WTSI_3_40602812	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230182861					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357669161	MGP_WTSI_3_40602812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40753325 () rs orientation: forward

Symbol	Name	Function Class
4921509J17Rik	RIKEN cDNA 4921509J17 gene	426 bp downstream
Cpgi13112	CpG island 13112	837 bp proximal
Plk4	polo like kinase 4	1138 bp upstream
Rr397650	regulatory region 397650	207 bp downstream
Rr575856	regulatory region 575856	within coordinates
Rr575857	regulatory region 575857	203 bp distal
Rr575858	regulatory region 575858	639 bp proximal
Rr575859	regulatory region 575859	1219 bp proximal
Tssr28972	transcription start site region 28972	1123 bp upstream
Tssr28973	transcription start site region 28973	1167 bp upstream
Tssr28974	transcription start site region 28974	1888 bp upstream