rs230121968 SNP Detail

Summary

• ID
  rs230121968
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTAAATG AATTTATTTT
  CCAACTTAGG GGCATGCTCT GCATTTAAAA AAAATATACT CACTTTTGCT TTCCCTACTG
  TGGTGAGGGT AAAATATGAT TCGGAAATTA AAGAGCCTCA TGTTTATTAC GTGTGCAGAC
  CACTCCTTTT GCTCAGCTGA ACAGGAGGTA TTTTGCCTCT CCCTTCGCTT CTTTCCCCAG
  S
  CCCTGCTTTC TTACAAGAGG TACAAAGGGA CAATTAGCAA GTATGAGGTG GTGTATATAG
  ACTGTATGCT TATACGACAC ATTTCATAGC CTCTGTATCA CTACACTTGC AAAACTACCC
  ACAGGATGTT TTGGGCCTGC ATTTTTAAGT GGCTTACCTG AGACCCTTTG CCTCATACCT
  ATGAAGAAGG GTAACACCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255943	CHEV_4_109961178	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230121968					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145770 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1695 bp distal
Rr597419	regulatory region 597419	1194 bp distal
Rr597420	regulatory region 597420	556 bp distal
Rr597421	regulatory region 597421	1689 bp proximal
Tssr42787	transcription start site region 42787	1956 bp upstream
Tssr42788	transcription start site region 42788	1932 bp upstream
Tssr42789	transcription start site region 42789	1687 bp upstream
Tssr42790	transcription start site region 42790	1039 bp upstream