rs230097236 SNP Detail

Summary

• ID
  rs230097236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29211192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAACCAA AAAAAAAAAA
  AAAAAAAAAA AAAGATAGAG CCCCTTTTTA GTCATCAAAG ACCACCAAGG AGCAAAGAAC
  TTTTACCCCA CCTTGACCTC CCCTGGCAGC CTATTTCCTT CTGTGGTTCA CTTAGAGGCC
  AGAGAAGAAA CACCAGAGTC TGGGGCCGTT GGCATTCTCT AGATAAAAAT CACCCTTCAC
  Y
  CGTGGGCCGG CAGGAGGGCG CCCTCCTCAG AGCAACAGGA AAGCTGACCG ACAAACAGGA
  CAATTTATGA GCCAGGGTAG AGATGACAGG TGACAGGCCA CAGATGCTAT TGACTCTCTA
  GCAGCTACTC TGCCCTAATC AAGGGTTCTG ATGCTCCTTC CTGGCAGGGA TGTCGTCCTG
  CAGCCAGGAG ACACAGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367809241	MGP_WTSI_6_29161193	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230097236					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367809241	MGP_WTSI_6_29161193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29211192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17225	CpG island 17225	357 bp proximal
D6Mit180	DNA segment, Chr 6, Massachusetts Institute of Technology 180	1605 bp proximal
Impdh1	inosine monophosphate dehydrogenase 1	Intron
Rr627515	regulatory region 627515	within coordinates
Rr627516	regulatory region 627516	822 bp proximal
Rr627517	regulatory region 627517	1046 bp proximal
Tssr55214	transcription start site region 55214	1212 bp upstream
Tssr60074	transcription start site region 60074	1047 bp downstream
Tssr60075	transcription start site region 60075	1103 bp downstream
Tssr60076	transcription start site region 60076	1262 bp downstream