rs230083647 SNP Detail

Summary

• ID
  rs230083647
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83751701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCTCT AACAGGGACA
  GGGACCAAGT CTTCAGGAAA AGAAACCTCC ATGAGGGAAG AGAAAGGGCT GGACATTCTC
  CCTTAGGACA AATGACACTG AGTGGAGAGA GGGCAATAGC TAACTAAGCG TTACAAACTG
  TCCTTATTGT CCCTATAAGT TCTAAGCCTG GGCTGGGATT GGGGACCTGG TGTTAGAGAC
  M
  GTGGACACTG TGAGACAGAC ACAGGAAAGC GAAGCCATGA ATACCTATCA ATGAAATATC
  TGCACTGTCA CCTTAAGGAA TGGCAGTAGG TTGTGAAACT ATGCCACCTG AGGCTGGAGG
  GCCAGGGGTG ATCTGGACCC AGGAGTGCAG ACTGCAGGGC AGGGAAGCAA GTGGGACACC
  CTCAGATCCT GGGTTCTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039056	MGP_WTSI_6_83724713	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	A	C	C	C	C	A	C	C	A	A	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230083647					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	A	C	C	C	C	A	C	C	A	A	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039056	MGP_WTSI_6_83724713	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83751701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	346 bp proximal
Gm52907	predicted gene, 52907	1166 bp upstream
Rr632937	regulatory region 632937	273 bp distal
Rr632938	regulatory region 632938	950 bp proximal
Rr632939	regulatory region 632939	1084 bp proximal
Rr632940	regulatory region 632940	1177 bp proximal
Rr632941	regulatory region 632941	1482 bp proximal
Tex261	testis expressed gene 261	Intron
Tssr1911	transcription start site region 1911	1209 bp upstream
Tssr57375	transcription start site region 57375	919 bp upstream
Tssr61705	transcription start site region 61705	841 bp downstream
Tssr61706	transcription start site region 61706	856 bp downstream
Tssr61707	transcription start site region 61707	863 bp downstream
Tssr61708	transcription start site region 61708	891 bp downstream
Tssr61709	transcription start site region 61709	950 bp downstream
Tssr61710	transcription start site region 61710	1027 bp downstream
Tssr61711	transcription start site region 61711	1048 bp downstream