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rs230069624 SNP Detail
Summary
  • ID
    rs230069624
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr7:28077604 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGAAGCTGA TGCTTTGTCG
CAGCACATGG GGCTGGCCAG GGAGAGCTAG GTCCTCGGTG GGGTTGTGGA TGAAGTGGCA
TCGAGAGCCA TAGGGGCAGC GGCCCTGGAG GTAGAACTTG TGGCAGAGTT CCGTTTTGTA
CTTGGGGTGG CGATTGGCTT GGCGAAGTTC ACCCAGGCCG TGAGCAAACT GGCACTTGGC
M
CCGTAGCGAC AACGCCCGCT TTCTGAGTAG GTCCGACAGA GCTCGGTCTT GTATCGAGAG
GAGGTGGTGG GAGTTGCAGT AGGCGAAGTA GGTGAGGGTG ACAGCTCAGG GCCTGGGCGG
GGAGCCAAAG GTGCAAAACC AGGGGGTGGG GGTACCCAGC CACAGCTTCG GCCCTCCACC
AGGCTAGTGG AGCGGCCAGT                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370858525 MGP_WTSI_7_29163198 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230069624 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370858525 MGP_WTSI_7_29163198 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:28077604 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm44710 predicted gene 44710 801 bp upstream
Gm73785 predicted gene, 73785 1505 bp upstream
Rr380568 regulatory region 380568 1393 bp downstream
Rr400210 regulatory region 400210 1031 bp upstream
Rr644239 regulatory region 644239 1015 bp distal
Rr644240 regulatory region 644240 225 bp distal
Rr644241 regulatory region 644241 311 bp proximal
Rr644242 regulatory region 644242 812 bp proximal
Rr644243 regulatory region 644243 1066 bp proximal
Rr644244 regulatory region 644244 1951 bp proximal
Tssr2163 transcription start site region 2163 1177 bp downstream
Tssr2164 transcription start site region 2164 1310 bp downstream
Tssr2165 transcription start site region 2165 1353 bp downstream
Tssr65461 transcription start site region 65461 1616 bp downstream
Tssr65462 transcription start site region 65462 1441 bp downstream
Tssr65463 transcription start site region 65463 684 bp downstream
Tssr65464 transcription start site region 65464 126 bp downstream
Tssr65465 transcription start site region 65465 1173 bp upstream
Tssr71490 transcription start site region 71490 1185 bp upstream
Tssr71491 transcription start site region 71491 1088 bp upstream
Tssr71492 transcription start site region 71492 1010 bp upstream
Tssr71493 transcription start site region 71493 960 bp upstream
Tssr71494 transcription start site region 71494 925 bp upstream
Tssr71495 transcription start site region 71495 895 bp upstream
Tssr71496 transcription start site region 71496 548 bp upstream
Tssr71497 transcription start site region 71497 300 bp upstream
Tssr71498 transcription start site region 71498 239 bp upstream
Tssr71499 transcription start site region 71499 145 bp upstream
Tssr71500 transcription start site region 71500 121 bp upstream
Tssr71501 transcription start site region 71501 94 bp upstream
Tssr71502 transcription start site region 71502 69 bp upstream
Tssr71503 transcription start site region 71503 28 bp upstream
Tssr71504 transcription start site region 71504 within coordinates
Tssr71505 transcription start site region 71505 8 bp downstream
Tssr71506 transcription start site region 71506 27 bp downstream
Tssr71507 transcription start site region 71507 68 bp downstream
Tssr71508 transcription start site region 71508 90 bp downstream
Tssr71509 transcription start site region 71509 128 bp downstream
Tssr71510 transcription start site region 71510 207 bp downstream
Tssr71511 transcription start site region 71511 246 bp downstream
Tssr71512 transcription start site region 71512 301 bp downstream
Tssr71513 transcription start site region 71513 917 bp downstream
Tssr71514 transcription start site region 71514 1046 bp downstream
Tssr71515 transcription start site region 71515 1068 bp downstream
Zfp36 zinc finger protein 36 Coding-Synonymous
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
01/28/2026
MGI 6.24 		The Jackson Laboratory