rs230066623 SNP Detail

Summary

• ID
  rs230066623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5532096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGGAGG GTAAGGGTGA
  TGTAATATCT CTGTTACTCT TTGCTGTTCC TTACCCCTCT GCCTCAGTGC AGAGCCAAGT
  TGAAGAATTC ATTAGAATGC TTAAATAAAG GGACAAAATG CAGAGGTGTG GCTGAAGTTA
  CAAGAACAAA GGACAGTGAT GCACTTAGGG GTTAGAGTGA AGGCAAGATG CTACCAGATA
  Y
  CATCAGCAGG GACTACACAG AACGCTGGAT CAGAAACAGC CGCTGCTCGC TGAATGAGAG
  CTGTGGTCTC AAGGCTGCAG AAATTCGTTT GTTTGATAGA GTAGGAGGGG GACATATATC
  ACAATCTCTC TCCCTCTCTC TCTCTCTCTC TCTCTCTCTC TCCCCTCCAT TCTTAACCCA
  TGCCAGAGAG GCAAAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321451371	CHEV_5_5482096	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230066623					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5532096 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Rr607007	regulatory region 607007	154 bp distal
Rr607008	regulatory region 607008	315 bp distal
Rr607009	regulatory region 607009	248 bp distal
Rr607010	regulatory region 607010	1224 bp proximal
Tssr45090	transcription start site region 45090	542 bp downstream